United in science: SLU’s role in unraveling genetic mechanisms of antimicrobial resistance in Escherichia coli amid Morocco’s climate change crisis

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This blog is written by Ikhlass El Berbri, associate professor of animal infectious diseases at the Agronomy and Veterinary Institute Hassan II, Morocco.

Ikhlass El Berbri and Erik Bongcam-Rudloff in Rabat, Morocco.

The world is currently facing an anthropogenic climate crisis that is already impacting human health and is likely to do so in increasingly severe ways. Climate change effects on human health include heat-related mortality, a variety of health issues from natural disasters like flooding and droughts, food insecurity due to reduced crop yields, and a heightened risk for the transmission of infectious diseases and the spread of antibiotic-resistant bacteria. Furthermore, climate-induced changes in temperature and rainfall, along with extreme weather events, promote the proliferation of resistant bacterial strains and increase the need for antibiotics, compounding the problem of antibiotic resistance.

The emergence of multiple drug-resistant bacteria is indeed rising to dangerously high levels globally, severely undermining the effectiveness of available antibiotics. As a result, even minor injuries and routine medical procedures now pose serious risks due to antibiotic-resistant infections.

Escherichia coli is a common pathogen found consistently in the digestive tracts of animals and humans, as well as in the environment. Multidrug resistance in Escherichia coli has become a concerning issue, increasingly observed in both humans and veterinary medicine worldwide. E. coli is intrinsically susceptible to almost all clinically relevant antimicrobial agents, but this bacterial species has a great capacity to accumulate resistance genes, mostly through horizontal gene transfer. In recent years, E. coli has become one of the common bacterial sources to antimicrobial resistance genes, which has been prevalent and exhibited an increasing trend. One of the most important factors favouring this spread is ecosystems and climate deregulation, which cause human and animal populations to migrate and create novel transmission pathways for pathogens, including E. coli.

In this context, and to assess the role of the environment in the transmission and spread of resistant bacteria, our project aims to determine the genetic relatedness of multidrug-resistant Escherichia coli isolated from animals and their environment.

With this regard, and to ensure that the results are thoroughly and effectively explored to understand the genetic mechanisms underlying this phenomenon, and in order to improve my skills in term of genomic sequencing and bioinformatics analysis, I have opted for a collaboration with a team with international renown researchers from the Department of Animal Sciences, Bioinformatics Section, led by Professor Erik Bongcam-Rudloff, at the Swedish University of Agricultural Sciences (SLU). The team’s innovative work and collaborative environment offer a unique chance to explore the complexities of my research, using their expertise to improve my understanding of the outcomes of my results.

      A photo capturing the essence of teamwork at the lab at SLU. Photo: Udeshika Sewwandi

During my stay at SLU, I gained a wealth of valuable knowledge and experience. I had the privilege of engaging with renowned experts in the field and built a strong network of contacts. These connections are very important for my academic journey and are also instrumental in facilitating future collaborations. Professor Erik Bongcam-Rudloff also visited the Veterinary Institute Hassan II in Morocco, where he delivered lectures and tutorials on bioinformatics for students and researchers. Following these productive exchanges of researchers between Sweden and Morocco, we are now prepared to launch new projects that leverage our combined expertise to address significant global health challenges.

 

A journey back in time – Reflections from IUFRO 2024

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This blog post is written by Anna-Klara Lindeborg, research advisor at SLU Global, in conjunction to IUFRO 2024.

Rubber plantation in Laos. Photo: Anna-Klara Lindeborg

As IUFRO 2024 – Forest and Society towards 2050 is coming to an end, I am reflecting on some of the sessions at the conference in conjunction to my own career path and research. The focus is to put attention to the research within the forestry sector and gender, a topic that has been part of my life for almost twenty years and an evident topic at IUFRO 2024.

Taking part in the session Local ecological knowledge of non-wood forest products for sustainable forest management and human well-being in diverse contexts, brings me back to 2006, when I was carrying out a Minor Field Study in Laos about gendered labour and the collection of fuel wood, which later became the reason why I wanted to apply for a PhD position.

When I was admitted as a PhD student in Social and Economic Geography at Uppsala University one year later, I signed up for a PhD course in Forest Governance at SLU. Part of the course was to participate in a pre-conference training workshop in UmeĂĄ with the title Adaptation of Forests to Climate Change: Working effectively at the Interface of Forest Science and Forest Policy, jointly organised by IUFRO’s Special Programme for Developing Countries (IUFRO-SPDC) and SLU. A special session was set up focusing on gender relations – Asking the right questions of society-forest adaptation – How can a gender perspective help? Gun Lidestav, associate professor in forest management at SLU, was the main driver of the session. She has been heavily engaged in IUFRO in several ways and in the field of gender and forestry. In IUFRO 2024 she was moderating the poster session In practice of a gender equal and inclusive forestry sector. One of the presentations focused on the project Gender dimensions to climate resilience of cocoa farming systems in West Africa, involving SLU professor Francisco Aguilar.

Another researcher at SLU contributing to the field of gender and forestry is Professor Seema Arora-Jonsson, who was teaching at the Forest Governance PhD course in 2008 that I was undertaking and was now participating in IUFRO 2024 in the session Integration of gender and diversity perspectives in knowledge production, amongst other things.

At the rubber plantation. Photo: Anna-Klara Lindeborg

Inspired by Lidestav’s and Arora-Jonsson’s work, I continued writing on my PhD thesis, which I defended in 2012 with the title Where Gendered Spaces Bend – the rubber phenomenon in Northern Laos. Associate professor Ann Grubbström, researcher in Environmental Communication at SLU, was in addition important for my research, as her comments and input meant a lot for my PhD thesis. She also participated at IUFRO 2024 in the poster session Smart Forestry – Transforming Forestry and the Future Forest Workforce and has hence contributed a lot to the research field of gender and forestry.

After different turns and career paths, I started as a research advisor at SLU Global in 2021. One of the tasks I have been engaged with recently is the MOOC for Gender Equality and Diversity in Forestry, coordinated by Ida Wallin, researcher at the Southern Swedish Forest Research Centre, SLU. The MOOC is supposed to achieve gender equality and diversity in forest-related sectors as well as bridging the education–practice gap. In addition, the course is one of the outputs for Gender Equality Taskforce within IUFRO, an important and relevant contribution from SLU Global and contributes to the implementation of the policy for SLU’s global contribution to Agenda 2030.

So to conclude it seems that several things are coming together attending IUFRO 2024. Almost 20 years have passed since I started to engage in the gender and forestry sector, but it is still a very vibrant and visible theme that is needed, even though it has developed a lot along the way. Many researchers at SLU are also involved within this broad research field, just a few of them mentioned here. I am pleased to say that I have contributed a little bit to this, however additional research is still needed on the topic which I hope to see at IUFRO 2029 in Kenya.

Beyond university gates: How research makes big impact to society in Rwanda

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This blog post is written by Alin Kadfak, researcher at the Department of Rural and Urban Development (SLU), in connection with a visit to Sweden by researchers from the University of Rwanda. The blog post was first published at SIANI’s website.

Dr. Jennifer Batamuliza talking about how the University of Rwanda contributes to gender equality in Science, Technology, Engineering and Mathematics (STEM). Photo: SLU Global

Obliged to focus on teaching and engaging with busy research work, researchers often fail to think beyond academic results. Dr. Jennifer Batamuliza and Professor Alfred Bizoza from the University of Rwanda (UR) informed us about techniques for transferring university knowledge to real-world impacts. 

What bring you to Sweden?

We are here to continue planning our courses as part of our collaboration between SLU and the UR in one of the fifteen sub-programmes of Sida-funded bilateral capacity-building programmes. The Engendering Rural Transformation and Sustainable Development (ENTRUST) sub-programme has four PhD students, three of whom are studying at the Swedish University of Agricultural Sciences.  Since 2017, we have closely collaborated with the Department of Rural and Urban Development and the Department of Economics at SLU. While visiting Sweden, we are collaborating developing two doctoral courses to be integrated at the University of Rwanda. The first PhD course “Farming, food consumption and health”, is being co-designed with Associate Professor Linley Chiwona Karltun of SLU. This is a collaborative undertaking with Dr Franklin Amuakwa Mensah at Luleå University of Technology, where our fourth PhD candidate is based. The second course focuses on “Information Communication Technology, Gender and Rural Transformation”, and we are partnering closely with Associate Professor Caroline Wamala Larsson, based at SPIDER at Stockholm University. Both courses are planned to be run as pilots in May-June 2025 and will be open to PhD students globally, focusing on the African context.

 

Such true collaboration brings up many lessons from both partners. We have learnt great stories from your works that create real impact on society. Can you share some of those examples with us?

One concern is that gender inequality remains high in the higher learning education in Rwanda. As shown in figure 1, the number of teachers, both male and female, has dropped drastically after primary education. One-fourth of the lecturers at university level are female. There are a serious concern that many of the girls and women do not make it to the top to pursue a professional career.

Figure 1: Male and Female Teachers/ Lecturers at all levels of education in Rwanda (Statistical Year Book , MINEDUC,2023) 

Women and girls make up half of the world’s population and hold half of the world’s human potential. When their lives are improved, the benefits reverberate across society. Access to decent work and regular income in the hands of women, for example, contributes not only to poverty reduction (SDG 1) but also supports better education, health and nutrition outcomes for women and girls and those who depend on them (SDGs 2, 3 and 4).

Mainstreamed diversity and gender perspectives in law and established programmes on gender studies lead to structural changes in institutions to make equality possible. At UR, we have a unique programme that supports girls and women in pursuing their education in science to build a more inclusive and equitable career path in science and technology. This is because we believe that science-related fields play a crucial role in sustainable development and women’s potential for creation and innovation cannot be left behind. Professional education for women is one of the solutions.

Source: Dr. Jennifer Batamuliza

Source: Dr. Jennifer Batamuliza

So, it is time to rethink gender relations to science! What is the role of science, technology, engineering and mathematics in countering this challenge?

Yes! STEM is a learning approach that integrates the areas of Science, Technology, Engineering and Mathematics (STEM), and we hope to encourage more girls and women to participate in this programme at our university. As many of us know, STEM is a male-dominated space, and we are trying hard to stop the leaky pipeline of women within the STEM field and create more inclusive workplaces and ecosystems to retain and support women in their STEM career advancement. Gender inequality in STEM is a result of stereotypes, bias and inequality that limits girls’ expectations and professional goals.

In Rwanda, as in many parts of the world, women and girls continue to be subject to social and cultural restrictions. Limited access to education and unfavourable treatments in working environments may hamper women’s advancement. At present, only 32% of young women are entering STEM programmes in Rwanda due to issues such as social and cultural restrictions and societal structure, which need to be changed.

 

How to address gender inequality through STEM?

There are many things you can do, but here are some points where we have started to see changes.

  • Creating role models: at the University of Rwanda, there is the Association of Women in Science and Engineering (RAWISE). This group is self-initiated by many female faculty members who come together and mentor to other female students. Having such a platform creates more than a role model, where the students can see their near future potential, and it provides open and safe spaces to share opportunities and challenges.
  • Networking: we started a virtual regional platform that serves as a networking space for women in STEM and helps them share and make available training courses and digital materials. Our university celebrates the International Day of Women and Girls in Science every year.

Can you tell us more about your other outreach activities beyond university gate?

Through the ENTRUST programme, we initiated a Societal University Village Initiative (SUVI) model in 2019, piloted and tested by the UR in 2018. We select “SUVI champions”, graduate students paired with people in the communities, and develop project ideas focusing on rural development, poverty alleviation and food security to implement at village level. Our SUVI champions work with local people to solve the real problems concerning their livelihoods, using the students’ science and technology skills. Results and stories from implementing the model tell us that this model is scalable and impactful.

There are several success stories from SUVI champions. The prominent one is their ability to create their own business plans to address the challenges facing their communities. For instance, SUVI champions are helping small farmers establish kitchen gardens to address issues of malnutrition. Similarly, others have initiated their small businesses, such as livestock rearing (cows, goats, sheep, pig, rabbits) and farming-related activities, such as farming mushrooms and other crops, in collaboration with communities where they are deployed. The SUVI model helps students to create their own jobs after their service through SUVI instead of waiting three to five years before getting employed. This model makes the skills and competencies available for rural transformation and ensures the equity in knowledge distribution across the country rather than being concentrated in the cities.

Source : SUVI, 2023

Source: SUVI, 2019

Source: SUVI, 2019

Dr. Jennifer Batamuliza is a lecturer at the University of Rwanda and a head of Data Driven Incubation Hub and Short Professional Courses at African Center of Excellence in Data Science, University of Rwanda. She is also a founder of RWA TECH HUB an organization that trains and mentors girls in ICT.  

Prof. Alfred R. BIZOZA is a Professor of Agricultural Economics from the University of Rwanda (UR) with extensive academic and policy research experience in areas of Agricultural Economics, Institutional Economics of Soil and Water Conservation, Economics of Land, Economics of Climate Change Adaptation, and Economic perspectives of Gender. 

Associate Professor Linley Chiwona Karltun is a researcher at the Department of Urban & Rural Development, Rural Development division at SLU, and a co-lead investigator for the Sida-funded bilateral capacity building programmes Engendering Rural Transformation and Sustainable Development (ENTRUST) sub-programme.  

Millets – ancient crops with a bright future

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This blog post is written by Katarina Börling, research adviser at SLU Global, in conjunction to the International Year of Millets 2023.

Sowing millets in the village of Samadey in 1995 ­– a collaborative process. One person created a pocket (hole), while another carefully placed 10-15 seeds into each pocket. After a few weeks, a thinning process took place, and only the three healthiest plants were retained. Photo: Katarina Börling

My first encounter with millets was in the 1990s, spending numerous hot hours in a pearl millets field in the village Samadey outside Niamey in Niger. This was part of a Minor Field Study linked to the PhD thesis of Johan Rockström, where he annually brought two SLU students. The fieldwork gave a good opportunity to follow the cultivation of millets on a farmer’s field. The daily routine also included a morning stop on our way out of Niamey, to buy “maza” – small millets pancakes, from a woman cooking them on a roadside wood stove, which served as our field lunch.

Purchase of lunch – millets pancakes – before leaving Niamey for a day of fieldwork. Photo: Katarina Börling

As one of the earliest domesticated crops with a history dating back 7 000 years, millets have been a staple crop in many parts of the world. However, in the past half-century, millets have been replaced in many regions, in favor of higher-yielding crops such as maize, rice and wheat. Yet, there is a rising interest in millets as they are resilient crops with low input requirements and an ability to cope with increasing effects of climate change, such as drought and flooding. In addition, the interest is driven by the health benefits and nutritional value of millets, providing gluten free grains rich in minerals, vitamins and antioxidants.

Here I’m measuring soil water content in the millet field during the sowing period, protecting the instrument from the hot sun with a shirt. Photo: Kristina Gullbrandsson

SLU symposium dedicated to millets

In India, the spotlight on millets was set a few of years ago, when declaring 2018 as the National Year of Millets. Building on this, the Government of India also proposed to the United Nations General Assembly to declare 2023 the International Year of Millets (IYM 2023). Throughout the year, information has been gathered and several events have been organised to inspire stakeholders from policymakers to farmers, civil society and researchers, promoting a reassessment of the crucial role that millets play both in diets and in production.

In contribution to IYM 2023, we at SLU Global together with SLU Plant Protection Network and SLU Breeding Network, organised a symposium dedicated to millets in September 2023 in Alnarp.The event brought together SLU researchers and MSc students, as well as several international participants. Keynote speaker was Patrick Okori, the Executive Secretary of the Regional Universities Forum for Capacity Building in Agriculture (RUFORUM), who gave an inspiring talk where he framed the role of different millet crops in a changing climate and how it can be used for diverse purposes, including as a healthy food alternative. However, he pointed out the need for further research and development on millets.

At the symposium, we discovered that the typical millet yield in Africa is as low as one ton per hectare. However, it was underscored that there is an unleashed yield potential of millets, which can be unlocked through improved breeding materials, optimized agricultural practices and improved seed systems. Concerning health benefits, several positive effects of millets consumption was raised, and we also learned that millets can be used for making nutritious porridge for undernourished children.

I was also very inspired by invited speaker Alexandra Klang from Svalorna (LINK) who talked about the Millets sisters in India. A group of Dalit women who are leading a change of norms in India by supporting small scale millets farmers, pushing politicians to introduce millets in schools, working with seed banks and improving market for millets. By sharing knowledge nationwide, they have elevated the millet cultivation, promoting indigenous knowledge and through that, provided food sovereignty.

Several of the speakers addressed the concern of vanishing cooking traditions, highlighting that millets pose a challenge in terms of preparation due to their unique demands in the kitchen. Also, some new millets varieties give a high yield, but doesn’t taste well, which emphasizes the delicate balance needed between cultivation benefits and gastronomic appeal in millets breeding. However, for us, the day at the millet symposium was nicely framed as we were served tasty millets-cookies for “fika” and a nice millet lunch, which made the day a holistic experience.

Johan Rockström and my fellow SLU student, Kristina Gullbrandsson, taking a break in the shadow during the fieldwork. The millet plants are growing bigger every week. Photo: Katarina Börling

Looking at the bright future for millets

During the week when I wrote this blog post, my excitement for millets reached new heights as I tuned into a news programme on national Swedish TV. Among the often discouraging news reports, a ray of positivity emerged when I witnessed the Indian farmer, Pradeep, passionately talking about his own experience of millets, and how millets can address the issue of food security. “More people’s hunger can be satisfied if more people eat millets, there is no doubt about it”. The journalist behind the feature, Malin Mendel, is a well-known Swedish international correspondent that has a taste for Indian cuisine and has written several cookbooks on the subject. When Malin tasted the millet pancakes that the farmer and his wife had cooked, she said with satisfaction “It tastes healthy!”, maybe implying that millets will become the new fashionable, healthy food making a comeback in the urban areas of India.

With increasing impacts of climate change that calls for resilient crops, coupled with an increasing demand for nutritious and healthy foods, I feel hopeful that the IYM 2023 will increase the interest in millets and that millets are ready for comeback.

The people in Samadey passing through the millets field at the end of the season before harvest of the millets. Photo: Katarina Börling

Find out more about SLU’s research and activities on millets and other traditional crops on SLU Global’s web here.

Social, environmental and economic challenges facing biodiversity in the Andes: Does the solution lie in the hands of the young?

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In the mountains region of Peru, at an altitude of 3000 to 4200 meters above sea level and in between multiple communities, there is a treasure of a landrace diversity of indigenous crops that has been maintained for thousands of years. However, this biodiversity and associated traditional knowledge is now at risk of eroding due to a continuous increase in youth’s migration to urban areas. Recently, I had the privilege to participate in a 10-day study tour to investigate and learn about key innovations of human adaptation to socio-ecological change and the conservation of agrobiodiversity. This tour exposed different aspects of crop diversity conservation by smallholder farmers and the significance of maintaining it for future generations. 

When leaving Peru’s capital city of Lima, one becomes quickly exposed to a different reality involving mountain culture and complex landscapes. Additionally, due to the brief description of the tour’s activities, I had no expectations prior to travelling. As a result, the tour truly shook my world in more ways than one. Together with a group of over twenty people from different countries, we witnessed a deep sense of pride in the country’s deeply rooted food patrimony and its linked agrobiodiversity. Between visiting different towns and rural communities, I was doing my own inquiry about rural youth’s perspective on the conservation of indigenous crops and landraces along with the challenges and opportunities associated with making a decent livelihood in the rural highlands.

Some members talking about strategies for engaging youth and women

With our first stop being Huamachuco, a town located in the north of Peru, we were instantly greeted by spectacular views and great hospitality. We had the chance to attend the annual meeting with AGUAPAN, (Association of Guardians of the Native Potato). Growing a high diversity of native potatoes, one of their main goals is preserving biodiversity and the culture surrounding it whilst putting an emphasis on social inclusion and gender equality. During the meeting, members approached matters like commerce and marketing of native potatoes with Miski papa, (the collective brand of AGUAPAN), migration of youth, communication problems and climate change. By this, they stimulate conversation about development while giving the farmers a voice and allowing them to join forces and exchange knowledge. The marketing of the native potato could possibly generate multiple job opportunities which will motivate younger people to stay and care for the crop. Moreover, seeing as it is a current issue, one of the topics discussed was youth’s and women’s engagement in agriculture, which many farmers had various ideas about. Seeing as potato seeds are passed down to generation by generation, many mentioned family dynamic and cultural appreciation as part of the solution. “We have to motivate the young to join AGUAPAN, and not only them but their families too, and with this our children will cultivate our native potato and unite with the group” suggested one member. Many seem to share this opinion, even youth. Talking with a younger member, he reveals that his motivation for conserving potato landraces comes from his family. “My ancestors had enough trust with their children to pass on this significant knowledge, I wanted my father to have the same ability to trust me and I hope I’ll do the same with my own children”.

Two women in a community posing for a picture. 

Continuing the tour, our next stop was Jauja, where we went on to visit different communities. With being the first foreigners to step foot in some of these communities, we were welcomed by people wearing their mesmerising and vibrant traditional clothing whilst singing and dancing. We were shown a plethora of different potato varieties and even informed about their names in Quechua, which are often related to their appearance. When asked about the roles of the members, the president of the community said: “We teach them (the children) how to plant and conserve the seeds, the benefits of each crop and how to share this knowledge. The women are seed selectors”. Furthermore, despite the women shying away from speaking, they are the most knowledgeable when it comes to the names of each variety. However, they are not the only ones as there are some kids who also possess this skill. An eight-year-old girl by the name of Roxanna approached me and started explaining some of the names. “My mother taught me (the names). I always go to the field with my parents. We grow everything together and work together on the land” she said. “Which one is your favourite?” I asked, and she looked at me like I just asked her to discard one of her dolls. “All of them”, she simply responded.

Now in the city of Huancayo, the capital of the Junín region, we are farther away from the farmers and getting in contact with nutrition where I learned about the Escuelas Sostenibles project. The project’s focus is obtaining food security for school children, which it does by using agroecological products in the alimentation system whilst also focusing on aspects like family farming. Hence, by this contributing to a developing local economy, internalizing healthy nutrition and preserving the local diversity. Therefore, Huancayo is an inspiration for nearby cities and provinces. For children, this can help create an interest in nutrition and agrobiodiversity as they are constantly exposed to an environment where a wide range of crops is related to healthy habits and sustainability. For the future, maintaining agrobiodiversity through systems like this could help in generating an abundant amount of career opportunities and therefore prosperity and a higher living standard as a result. Evidently, increasing the likelihood of younger people pursuing a career in agriculture.

The inhabitants of Laraos demostrating a ritual

Back in the Lima region, now we are in the beautiful village of Laraos. Tragically, it seemed as the closer we got to the city of Lima; the fewer youthful faces encountered ours. Further discussions with the farmers revealed that young people do return in time for festivals, like Laraos’ annual water festival (Limpia Sequia). “They come to the parties, identify with their culture and then leave. But yes, one notices that they come with a great will to dance, participate and have a good time.” The farmer said. Despite this, the future looks bright for Laraos. Already benefiting from agroecotourism, the inhabitants of the village have also explored the intimate link between agrobiodiversity and modern gastronomy by releasing the internationally praised cookbook with native recipes, SABORES. This link is of great significance for youth engagement in the maintenance of agrobiodiversity as it associates culinary arts with native crops and traditional knowledge. The short distance to the city of Lima along with the abundance of culinary schools, makes Laraos the ideal place for an alliance between the farmers and the modern-day chefs. Evidently, working closely with the local cuisine will help make youth realize the importance of agriculture and that a career in it does not lack prestige. Moreover, it also contributes to the development of the local economy and with access to societal services, which automatically will better the living quality. Others, however, share a different opinion. “What will solve all these problems we have is political change. The government needs to recognize us and our struggles. That is what will solve this, nothing else.” is what one farmer shared with us.

During this tour, a single question kept lurking in the shadow of all their stories; what will happen if youth continue to abandon what their ancestors have built up for decades? The answer is certainly scary. Custodian farmers in the Peruvian highlands continue to maintain and propagate a wide range of landraces and their cultural identity by constantly improving agriculture, implementing new techniques and technologies, making optimal use of the land and putting emphasis on a continuous process of innovation and evolution of the native potato. However, the key element in their preservation is passing on the knowledge to their children. Thus, it is crucial for young people to realize that despite all the challenges facing them, a plethora of possibilities lie in their place of origin which could motivate them to stay working closely with agrobiodiversity.

Photo credits: Huda Ibrahim.


SLU Youth Institute (SLU YI) aims to create interest among Swedish youth for global food security and to find sustainable solutions to the global challenges based on the UN Sustainable Development Goals. SLU Youth Institute is the Swedish part of many Youth Institutes coordinated by the World Food Prize Foundation. Read more at our Swedish website!